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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcatatataacattttatttattaatcttttatacttgataatgcaagtattttttttgtccatctgagtcatgatctatttatttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208029688|gb|GD832066.1|GD832066
EST:     GCATGTAATCGTGCTGATTACCTGGAGAGGACTATTAATTCTGTATTGAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: gi|192297484|gb|FG989519.1|FG989519
EST:     GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: gi|298181686|gb|HO025861.1|HO025861
EST:     GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGG
EST: gi|207696709|gb|GD676984.1|GD676984
EST:     CATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTAATTAAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: CATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGT-ATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: gi|298173640|gb|HO016976.1|HO016976
EST:     GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: gi|193308761|gb|FK273595.1|FK273595
EST:     GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
EST: gi|298195373|gb|HO039204.1|HO039204
EST:     GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTGTTAAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAgtatgcatca ... atttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataatgcaagtattttttttgtccatctgagtcatgatctatttatttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
 acttgat  putative branch site (score: 5)
                                          tttattttt  putative PPT
                                  atgatctatttatttt  TA-rich tract