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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaattcattgatttcttagtcaataaaaccaaccaatcattcccacattaacaaataaaattaatgtggtattgacatttgaaataatacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAACACTTTACAGACTATAGAGAACTTGCACCTCATCGCATCTCTGAGA

Basic information

species Glycine max
transcript GLYMA03G42280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42280.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------gtattgaattcatt--gatttcttagtcaataaaaccaaccaatcattcccacattaacaaata---aaattaatgtggtattgacatttgaaataatacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAACACTTTACAGACTATAGAGAACTTGCACCTCATCGCATCTCTGAGA
                   | ||||   | |  | ||| ||  ||  | |  | || |  | |   |    | ||         |    ||| | |||||            | |  |||| || |||||||| || |||||||||||||||| |||||| || |||||||| ||||  || |||   | ||||||| | ||||| ||  ||||||| |
gtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAA

upper sequence: GLYMA03G42280.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G46860.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------------------------------------gtattgaattcattgatttcttagtcaataaaaccaaccaat--cattcccacattaacaaataaaattaatgtggtattgacatttgaaataatacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAACACTTTACAGACTATAGAGAACTTGCACCTCATCGCATCTCTGAGA
                                                          | ||   | ||||  |  |   | || |  ||| | |  | |  |||     | || |       | | ||| |||  ||| |  |   ||   | |||||||||||||| || |||||||| || || ||||||||||| ||||| || ||||| || ||||||   | | |||| || ||||||||  ||   || |
gtttgcatagatctttcttagagatcatctaaaagtgcaagctctagaaattgatattgcataagaatcatcaaacttgcaatccaagaaatccaaaatttacatatgagctttgatcttggtactaaatatggctttgccggt--gaacgtttcagGGAGAGAAAGACGACAAAATCATAGCCGTATGTGCTGATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTCCAAGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcccacattaacaaataaaattaatgtggtattgacatttgaaataatacagGGAGAGAAAGATGATAAAATCATTGCAGTGTGTGCTGATGACCCAGAATATAAACACTTTACAGACTATAGAGAACTTGCACCTCATCGCATCTCTGAGA
                                tattgac  putative branch site (score: 2)
         attaacaaataaaatt  TA-rich tract