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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatttaaattcttccacatgcaaattaatttaaagaacttatgatttaattttgtccaaataattatctaatccaatatatcaattatgcatactcacttccttttgtaatattaattaattagGACCCGAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTAGGGTACTGGCCAGAAGGGTTATTCACACACTTGGCCACACACGCCACCA

Basic information

species Glycine max
transcript GLYMA03G41280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41280.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G18460.1 (Arabidopsis thaliana), 3'ss of exon 6
gttaatatttaaattcttccacatgcaaattaatttaaagaacttatgatttaattttgtccaaataattatctaatccaatatatcaattatgcatactcacttccttttgtaatattaattaattagGACCCGAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTAGGGTACTGGCCAGAAGGGTTATTCACACACTTGGCCACACACGCCACCA
                             |  |    |   | | | | | |||     | | | |||| |   ||      || ||   || | |   |  ||   || | |  | |    |    |||| |||||| | ||||||||||||||| |||| || ||| ||||| | || ||||| |||||||  | | ||||||| |||||||||   ||||| || |
----------------------------gtggacgacatagaataacggtgtaaaagcatgctactaat-acaaaagaattcatttcttctaagaaagatgtctaaattatattctttgggatttgcagGATCCGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTCGGGTATTGGCCAGCCGAGCTATTCACGCACTTGGCCGACCACGCGACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233563|gb|BE802451.1|BE802451
EST:     TCTCATCTTATGAATCCAACCAATATGACATCACCATCCTAATTTGGAAT                         GACCCGAAAGTAGGGAATTGGTGGATGAGTNTTGGTGATGGCACATTGGTA
genomic: TCTCATCTTATGAATCCAACCAATATGACATCACCATCCTAATTTGGAAGgttaatattt ... aattaattagGACCCGAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatccaatatatcaattatgcatactcacttccttttgtaatattaattaattagGACCCGAAAGTAGGGAATTGGTGGATGAGTTTTGGTGATGGCACATTGGTAGGGTACTGGCCAGAAGGGTTATTCACACACTTGGCCACACACGCCACCA
                           acttccttttgtaata  TA-rich tract