1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgagaagagtgaaaaagttagccttaaattgaaagaaaaaaaagttacaaaagagatttggttgcctgatggctggttattttacttggcacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAATATATGAACAAATAGAAAGCCTTGCTAAGAAATACCAGAGCACTCCTC
species | Glycine max |
transcript | GLYMA03G40880.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|10233104|gb|BE802049.1|BE802049
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|20811954|gb|BQ296432.1|BQ296432
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|10254586|gb|BE822352.1|BE822352
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|6666289|gb|AW277748.1|AW277748
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAEST: gi|209721585|gb|BW671726.1|BW671726
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
EST: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTG ACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
genomic: TTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatatt ... cacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGA
ttacaaaagagatttggttgcctgatggctggttattttacttggcacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAATATATGAACAAATAGAAAGCCTTGCTAAGAAATACCAGAGCACTCCTC
gcctgat putative branch site (score: 4)
ttattttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgagaagagtgaaaaagttagccttaaattgaaagaaaaaaaagttacaaaagagatttggttgcctgatggctggttattttacttggcacttggcagACTTTACATCATCCTCGGTTCCAAGCAGAGAACATAAACAAGAACAAGAGAATATATGAACAAATAGAAAGCCTTGCTAAGAAATACCAGAGCACTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - -gaaaaag
- - - - - - - - - - -gccttaa
- - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -aaaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggc