1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacaccttggtctagggtgtatgggcagtataactgtgcattccatgtgctaagattttagaacgcaagtgcataactattttcttcaatttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAAACTGTCAGAGAAGGACCTGAGAGAAATTTCTGAGGCGGTTCCCATTGG
species | Glycine max |
transcript | GLYMA03G40870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAEST: gi|20812683|gb|BQ297161.1|BQ297161
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAEST: gi|20812930|gb|BQ297408.1|BQ297408
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAEST: gi|26269337|gb|CA820400.1|CA820400
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
EST: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTG GAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
genomic: GGCATTAGCGTGGCTACTCCAGCAAGGCGAGGATGTTGTACCTATCCCTGgtgagtggaa ... ttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGA
tgtgctaagattttagaacgcaagtgcataactattttcttcaatttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAAACTGTCAGAGAAGGACCTGAGAGAAATTTCTGAGGCGGTTCCCATTGG
gcataac putative branch site (score: 3)
tttattt putative PPT
ataactattttcttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaccttggtctagggtgtatgggcagtataactgtgcattccatgtgctaagattttagaacgcaagtgcataactattttcttcaatttatttacagGAACAACTAAGATTAAGAACCTGGATCAGAATATAGGTGCCTTAGCAGTGAAACTGTCAGAGAAGGACCTGAGAGAAATTTCTGAGGCGGTTCCCATTGG
cacacct
- - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - - -gcattcc
- - - - - - - - - - - - - - - - - - - - - - - -tgctaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa