1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtccttatttcttcaaaataagttaaaccaaacatgcacttgcgttgcgtgtttagtttgcatggtaatcaactgaaacaattatgaatatgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAACAACTGTGCCTGCTGCAGACCAAGGATACAATTCTTACCCTGCCCATG
species | Glycine max |
transcript | GLYMA03G40840.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|19347622|gb|BM892480.1|BM892480
genomic: AGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|7693098|gb|AW761196.1|AW761196
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|15286643|gb|BI470534.1|BI470534
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|192331608|gb|FK019969.1|FK019969
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|6846986|gb|AW349276.1|AW349276
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|208059868|gb|GD857842.1|GD857842
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|208175609|gb|GD973406.1|GD973406
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCAEST: gi|12687962|gb|BG154237.1|BG154237
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|193463246|gb|FK428654.1|FK428654
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|31311368|gb|CD396571.1|CD396571
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|4314126|gb|AI461245.1|AI461245
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGEST: gi|193688669|gb|FK629634.1|FK629634
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAG
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|192328162|gb|FK020423.1|FK020423
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCEST: gi|193711267|gb|FK643876.1|FK643876
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGC
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|192325182|gb|FK019098.1|FK019098
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGAGGAACTGCTTCTCAAGTCCAAACAACACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|15286056|gb|BI469947.1|BI469947
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|16105469|gb|BI893209.1|BI893209
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|207698915|gb|GD680748.1|GD680748
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|16345362|gb|BI970957.1|BI970957
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|51343089|gb|CO983822.1|CO983822
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|7587865|gb|AW703672.1|AW703672
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: GCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAEST: gi|254332499|gb|GR846437.1|GR846437
genomic: GCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
EST: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAG AATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
genomic: AAATCAGTGGAACTGCTTCTCAAGTCCAAACAGCACAGCAACTAATACAGgtaatactga ... tgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAA
tgcgtgtttagtttgcatggtaatcaactgaaacaattatgaatatgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAACAACTGTGCCTGCTGCAGACCAAGGATACAATTCTTACCCTGCCCATG
aaacaattatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttatttcttcaaaataagttaaaccaaacatgcacttgcgttgcgtgtttagtttgcatggtaatcaactgaaacaattatgaatatgtggtgcagAATTTTATGGCTGAAGCTGCAGCTGCAGCTGCAGCACCAGCACAGCCGCAAACAACTGTGCCTGCTGCAGACCAAGGATACAATTCTTACCCTGCCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - aaaataa
- - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - tgcactt
- - - - - - - - - - - - - - - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactga