1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catgggctcataatactatatcgtgacgtcatgtcagcatttaattgtgaattgtttttgccagagaattaacatttctggagcctctcatgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAAACTCAGCAAAGATGATTTAAAGGAGATTACAGATGCTGTACCAATATC
species | Glycine max |
transcript | GLYMA03G40680.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTTGCATGGATTTTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|6913427|gb|AW394948.1|AW394948
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|193419001|gb|FK384821.1|FK384821
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|31472024|gb|CD414052.1|CD414052
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|38192802|gb|CF922008.1|CF922008
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|17998790|gb|BI245414.1|BI245414
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTGATATCGGTTCATGTGAAGTGAEST: gi|21887306|gb|BQ740519.1|BQ740519
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|192332296|gb|FK025961.1|FK025961
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|192334363|gb|FK025540.1|FK025540
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|12772321|gb|BG237248.1|BG237248
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TTCTTCATGAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|12496212|gb|BG046951.1|BG046951
genomic: TTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|261497124|gb|GT185192.1|GT185192
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|5761333|gb|AI966692.1|AI966692
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGEST: gi|58017212|gb|CX703954.1|CX703954
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCG
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|19937667|gb|BQ081378.1|BQ081378
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|209701736|gb|BW667401.1|BW667401
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCEST: gi|9902294|gb|BE611262.1|BE611262
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATC
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|58014894|gb|CX701636.1|CX701636
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|21887893|gb|BQ741106.1|BQ741106
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|31464493|gb|CD406521.1|CD406521
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|209701737|gb|BW667402.1|BW667402
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAEST: gi|7285866|gb|AW598353.1|AW598353
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCCGGT-CATGTGAAGTGEST: gi|209699282|gb|BW670244.1|BW670244
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATC-GGTTCATGTGAAGTG
EST: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTG GAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
genomic: TGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGgtgagtgatt ... tgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGA
tgtgaattgtttttgccagagaattaacatttctggagcctctcatgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAAACTCAGCAAAGATGATTTAAAGGAGATTACAGATGCTGTACCAATATC
aattaac putative branch site (score: 2)
cctctcat putative PPT
aattaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgggctcataatactatatcgtgacgtcatgtcagcatttaattgtgaattgtttttgccagagaattaacatttctggagcctctcatgtattgcagGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAAACTCAGCAAAGATGATTTAAAGGAGATTACAGATGCTGTACCAATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctca