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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataaattttcactttcattgttattttacattaaacattcattcctttcttcattttccagaattggtatcggtgctcatttagtaataaatacttcaattggtttattacttgttttgtttctagGTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGCTTGTTTGGTATTAAATTGGGTGATTTCTG

Basic information

species Glycine max
transcript GLYMA03G40600.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205460|gb|BU964713.1|BU964713
EST:     CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGG                         GTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC
genomic: CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGGgtgataaatt ... ttgtttctagGTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC
EST: gi|208046299|gb|GD848687.1|GD848687
EST:     CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGG                         GTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC
genomic: CATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGGgtgataaatt ... ttgtttctagGTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgctcatttagtaataaatacttcaattggtttattacttgttttgtttctagGTTACTGTTTACAAGCAGCGAGCAAGTCGGCTAGCTTCCCTTAACAAGCGCTTGTTTGGTATTAAATTGGGTGATTTCTG
                                       cttgttttgtttct  CT-rich tract
       atttagtaataaatac  TA-rich tract