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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatatggcatttgctctgacttgtcgaggcttctttacctttgaaacattagatatggtttgtttgcgctttagtagcttgaattttatgggatgttgtctcttaccatggtttatttcttcaatttatttggggttcactagGTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAG

Basic information

species Glycine max
transcript GLYMA03G40440.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 6
gtacaatatggcatttgctctgacttgtcgaggcttctttacctttgaaacattagatatggtttgtttgcgctttagt-agcttgaattttatgggatgttgtctcttaccatggtttatttcttcaatttatt--tggggttcactagGTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAG
                                                  |||   ||||  ||   ||     ||  | |||| |  | ||       |||  || |||         | || |       | |  |   || |  |||||||||||| | |||||| ||||| | || ||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
--------------------------------------------------catcttatatccttgacttctatgttgatcagctagtgtgttgctcctggtttactattattggaaagcaattttatggcaaactgctactgtactgtagGTTGTGCGTATTTGGGACCCAAGAACTGGTTCAAAGACTATGAAGCTCAGAGGGCATACAGATAACATTAGGGCTCTGCTTCTGGATTCTACTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924456|gb|AW830482.1|AW830482
EST:     TGGCTATGAATGAAAGTGGAACAATTCTTGTCTCTGGTGGCACAGAAAAG                         GTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGA
genomic: TGGCTATGAATGAAAGTGGAACAATTCTTGTCTCTGGTGGCACAGAAAAGgtacaatatg ... ggttcactagGTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggatgttgtctcttaccatggtttatttcttcaatttatttggggttcactagGTTGTGCGTGTCTGGGACACAAGATCAGGATCAAAGACTCTAAAGCTAAGAGGGCATACAGATAACATCAGGGCTCTGCTTCTGGATTCTAGTGGCAG
           ctcttac  putative branch site (score: 3)
                       tttatttcttcaattt  TA-rich tract