1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actgatttattttacaatacaaagtatctgcatgataatgcatccagtcaaaactcaaaagtaaagattaaatttgttactatgatttcttctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTGGGATCTTCAC
species | Glycine max |
transcript | GLYMA03G40330.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGAT AGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCEST: gi|23064160|gb|BU578933.1|BU578933
genomic: AAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATgtacgttcaa ... tctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTC
EST: AAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGAT AGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCEST: gi|10236977|gb|BE805865.1|BE805865
genomic: AAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATgtacgttcaa ... tctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTC
EST: AAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGAT AGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTC
genomic: AAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATgtacgttcaa ... tctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTC
agtcaaaactcaaaagtaaagattaaatttgttactatgatttcttctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTGGGATCTTCAC
tttcttctgt CT-rich tract
aaaagtaaagattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgatttattttacaatacaaagtatctgcatgataatgcatccagtcaaaactcaaaagtaaagattaaatttgttactatgatttcttctgtaacagAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTGGGATCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - caataca
- - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - -gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa