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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagcctttcatattttgttcaaaattcaatattttagtattcaagtcatgaaaatttaccatccaatgcatataactagttgttatccaatctatatatctttatgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG

Basic information

species Glycine max
transcript GLYMA03G38810.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402134|gb|EV271947.1|EV271947
EST:     GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAA                         GTGGGGTAATATAGAATTTCCATTGCCTTTTTGAAGAATTCTGAGCCCTAC
genomic: GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAAgtataagcct ... atgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC
EST: gi|58018692|gb|CX705434.1|CX705434
EST:     ATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTC-ACAAA                         GTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCNTA
genomic: ATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAAC-AAgtataagcct ... atgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTA
EST: gi|37997687|gb|CF809276.1|CF809276
EST:     GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAA                         GTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC
genomic: GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAAgtataagcct ... atgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC
EST: gi|151407958|gb|EV277773.1|EV277773
EST:     GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAA                         GTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC
genomic: GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAAgtataagcct ... atgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC
EST: gi|15202616|gb|BI425495.1|BI425495
EST:     GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAA                         GTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC
genomic: GATATGAGAGGGGAATTGGATGACACTGCCGCATTCAAGAACTTCAACAAgtataagcct ... atgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatccaatgcatataactagttgttatccaatctatatatctttatgctttcagGTGGGGTAATATAGAATTTCCATTGCCTTTTGGAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG
           atataac  putative branch site (score: 3)
                                        tctttat  putative PPT
                              aatctatatatcttta  TA-rich tract