Sequence
atgc intronic sequence ATGC exonic sequencegtaaggttccttttcttttttcttttttttcttactctcagctgtgtggtctaatcaatgtgtaaccattaattacctttggttcctggttctttataatctacgcagGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCACCTCATTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGT
Basic information
species | Glycine max |
transcript | GLYMA03G37420.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G37420.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaggttccttttcttttttcttttttttcttactctcagctgtgtggtctaatcaatgtgtaaccattaattacctt-tggttcctggttctttataatctacgcagGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCACCTCATTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGT
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-----------------------gtttttgcatatataccact-catcttctcattgaaatttaaaaatcaaggaatttatgatatatgtgtatacatattt---atagGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193568444|gb|FK523927.1|FK523927EST: TGGCTCCTCTTCTTCCCAATTCACCCCAG GTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCA
genomic: TGGCTCCTCTTCTTCCCAATTCACCCCAGgtaaggttcc ... atctacgcagGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaatgtgtaaccattaattacctttggttcctggttctttataatctacgcagGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCACCTCATTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGT
cattaat putative branch site (score: 3)
ttctttataatcta TA-rich tract