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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtattgtgatcccagtttgttccaatttccggtctatcttgagctatttgctgttattctaagtcaggcacattgtcttttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGG

Basic information

species Glycine max
transcript GLYMA03G35170.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12689767|gb|BG156103.1|BG156103
EST:     TATTGGAATAAACATTACAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
genomic: TATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgt ... ttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
EST: gi|16347635|gb|BI973230.1|BI973230
EST:     AGATATTGTTGTTATTGGAAT-ATTTTTTCAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
genomic: AGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgt ... ttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
EST: gi|16105461|gb|BI893201.1|BI893201
EST:     AGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAG                         ATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT
genomic: AGATATTGTTGTTATTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtattgt ... ttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttgagctatttgctgttattctaagtcaggcacattgtcttttgatttcagATGCTGATCTCCTCGAACTGAAGGAATCTAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGATGG
                                           ttttgat  putative branch site (score: 4)
                                      ttgtctttt  CT-rich tract
                   ttattctaa  TA-rich tract