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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttattttgttttcttgaattatcatttatcaggaatatgcaggaacaagacaaactatgttgactgcttatgatccaaattcatgtgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTAT

Basic information

species Glycine max
transcript GLYMA03G34800.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34800.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttattttgttttcttgaattatcatttatcaggaatatgcaggaacaagacaaactatgttgactgcttatgatccaaattcatgtgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTAT
    ||   | ||||||  |    |   |||||   | ||| ||  || | | |   |||    | ||| |   | |   ||   ||| |||     | ||||  | ||||||||||||| |||||||||||| | ||||||||||||||||||||| | ||| ||||| | ||||| |||||   ||| ||||| ||||| ||  | ||| 
----gtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaaccta---aaatctaggtgattaactct--ccctttttcttgt-----taatgtttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTTAGGAAGCTTGTAGCTCACATTGTCACCTTTGTCTTTTACTGTGTGGTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactatgttgactgcttatgatccaaattcatgtgtatgttatgtccattgcagAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTAT
      tgttgac  putative branch site (score: 3)
                         aaattcat  TA-rich tract