Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgcttgatttctccttgtccctgtccttttatcaattagttcacatttttaaaactagcttttcgggatataatgttgctagGTTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCGATGCTCAATACCCTGGTTTATAATGGCTTGTCCCATGTTAGTGATCATCATAATAGGCCTC

Basic information

species Glycine max
transcript GLYMA03G34650.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34650.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 5
gtaa-ctgcttgatttctccttgtccctgtccttttatcaattagttcacatttttaaaactagcttttcgggatataatgttgctagGTTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCGATGCTCAATACCCTGGTTTATAATGGCTTGTCCCATGTTAGTGAT---CATCATAATAGGCCTC
||||  |  |||  || || ||  || |      || ||| || ||    |||||       | | |||   |||   |||    ||||||||||||| | | ||||||||  |||||||||| || ||||||||||| || || |||||||| |  | ||||| ||||| |   || || ||||| |   
gtaaattagttgggttttctttcaccattgggaattgtca-ttggtatttatttt-------aacattt---gatgccatgc-attagGTTCCATTCACACTGGAGCAGCAGCGAAGAATTGCATCAATGCTCAATACACTAGTGTATAATGGTTCATTCCATGGTAGTGGTGGCCAGCAGAATAGAC---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcaattagttcacatttttaaaactagcttttcgggatataatgttgctagGTTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCGATGCTCAATACCCTGGTTTATAATGGCTTGTCCCATGTTAGTGATCATCATAATAGGCCTC
      aattagttcacatttt  TA-rich tract