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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttgaaattgtagtatgctgcaatagttctagtgatcacaattttattactattgaaaccctggctaggtcacaaatatgataaactatataatatttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCCTTGACAGAGAGATAGACCTTGCTGCTTTTTTGCAAAAGTACAAGAAGCT

Basic information

species Glycine max
transcript GLYMA03G34540.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997616|gb|CF809205.1|CF809205
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACG
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACG
EST: gi|151404521|gb|EV274335.1|EV274335
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|58015690|gb|CX702432.1|CX702432
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|151395409|gb|EV265286.1|EV265286
EST:     AGACATGTTGAAATCGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|213601793|gb|DB982518.1|DB982518
EST:     AGACATGTTGAAATTGAGTTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|254348136|gb|GR851815.1|GR851815
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|10848156|gb|BF071686.1|BF071686
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|22931595|gb|BU548734.1|BU548734
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCNNNTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
EST: gi|27427318|gb|CA938838.1|CA938838
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCAC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCAC
EST: gi|192328158|gb|FK020419.1|FK020419
EST:     AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAG                         AGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC
genomic: AGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATCCAAGgtatgatttg ... atttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattgaaaccctggctaggtcacaaatatgataaactatataatatttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCCTTGACAGAGAGATAGACCTTGCTGCTTTTTTGCAAAAGTACAAGAAGCT
                                            tattttt  CT-rich tract
                    tcacaaatatgataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgatttgaaattgtagtatgctgcaatagttctagtgatcacaattttattactattgaaaccctggctaggtcacaaatatgataaactatataatatttttgcagAGTCTGCAAATAAGACTGACGAGGAATCTGAAAACTTGCACCAGCATCTCCTTGACAGAGAGATAGACCTTGCTGCTTTTTTGCAAAAGTACAAGAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC