1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatatataatatatttatcttttgttatatagttgcttaaataataataatatacacgcataatgtatgcaaaaccacgacaaagacaacaatgccaacttgtttaaactgtctcatctgaattttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTTAAGATGCGGCCTCCTGAGTATTGG
species | Glycine max |
transcript | GLYMA03G33830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|193482793|gb|FK444028.1|FK444028
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTTCCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGEST: gi|208084558|gb|GD879748.1|GD879748
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGG
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGEST: gi|193696493|gb|FK640211.1|FK640211
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTG
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGGTACTGGTTTGGTTGTTCNTGATGCTGGTGCTTAEST: gi|209728052|gb|BW666774.1|BW666774
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGG-TACTGGTTTGGTTGTTCATGATGCTGGTGCTTA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|192320762|gb|FK013852.1|FK013852
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|208074477|gb|GD868226.1|GD868226
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGT-CTGGTTTGGTTGTTCATGATGCTGGTGCTTAEST: gi|22933900|gb|BU551039.1|BU551039
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|193340317|gb|FK308232.1|FK308232
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCTEST: gi|31307406|gb|CD392609.1|CD392609
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGC-
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|193415754|gb|FK377536.1|FK377536
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|7686642|gb|AW757299.1|AW757299
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|11274749|gb|BF325084.1|BF325084
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|298183270|gb|HO028483.1|HO028483
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|254341594|gb|GR852731.1|GR852731
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|8403044|gb|BE058678.1|BE058678
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|193522468|gb|FK477819.1|FK477819
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: GTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTAACCTACTCCAGCCAAG GGTACTGGTTTGGTTGCTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|193321071|gb|FK287740.1|FK287740
genomic: GTCTGCAGATTTCTTAGGAAAAGGAAGAGAACT-ACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|214009937|gb|DB989661.1|DB989661
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCAEST: gi|11413960|gb|BF426035.1|BF426035
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
EST: AGTCTGCAGATTTCTTAAGAAAAAGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGAAGCTGGEST: gi|193719674|gb|FK652256.1|FK652256
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGG
EST: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAG GGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
genomic: AGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTACCTACTCCAGCCAAGgtaatatata ... ttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCA
acaaagacaacaatgccaacttgtttaaactgtctcatctgaattttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTTAAGATGCGGCCTCCTGAGTATTGG
ttttaat putative branch site (score: 3)
atctgaattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatataatatatttatcttttgttatatagttgcttaaataataataatatacacgcataatgtatgcaaaaccacgacaaagacaacaatgccaacttgtttaaactgtctcatctgaattttaatggcagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGCATGGCATCAACCTACAATCTTAAGATGCGGCCTCCTGAGTATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG