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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCT

Basic information

species Glycine max
transcript GLYMA03G33270.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208156572|gb|GD956854.1|GD956854
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|254344581|gb|GR855452.1|GR855452
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208294148|gb|GE096067.1|GE096067
EST:     GATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAAATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: GATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|207693992|gb|GD675067.1|GD675067
EST:     GGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATTTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: -GTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|192331339|gb|FK023808.1|FK023808
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCT
EST: gi|151411040|gb|EV280851.1|EV280851
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAGGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|298199246|gb|HO042609.1|HO042609
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCCGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|26058479|gb|CA801393.1|CA801393
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208254682|gb|GE051228.1|GE051228
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|254332768|gb|GR846599.1|GR846599
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|120534327|gb|EH262460.1|EH262460
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|120528988|gb|EH257122.1|EH257122
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|192320086|gb|FK014170.1|FK014170
EST:     CGTCGTGGAAGAAGCACGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|6846249|gb|AW348539.1|AW348539
EST:     CGTCGTNGAAGAAGCAGGGANNGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208318139|gb|GE114078.1|GE114078
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|207839844|gb|GD810037.1|GD810037
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCAACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|192328414|gb|FK020125.1|FK020125
EST:     CGTCGTGGAATAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACGG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|207765392|gb|GD738171.1|GD738171
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|208022923|gb|GD820933.1|GD820933
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|7146149|gb|AW508071.1|AW508071
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGTCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGATGAGAACGAAGCCCCAGTT-CTGGAGATA
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCC-AGTTTCTGAAGATA
EST: gi|208276808|gb|GE073395.1|GE073395
EST:     CGTCGTGGAAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAG                         CCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTT
EST: gi|120534599|gb|EH262732.1|EH262732
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|151398264|gb|EV268142.1|EV268142
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCGGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|7692938|gb|AW761037.1|AW761037
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|193626318|gb|FK572682.1|FK572682
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAG
EST: gi|208233570|gb|GE031451.1|GE031451
EST:     CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG                         CCGATCGAGATCTCCT
genomic: CGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGgtttgatttt ... ttcttgccagCCGATCGAGATCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCT
   ttataac  putative branch site (score: 2)
                                             ttcttgcc  putative PPT
     ataacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgattttaacagtcactaatcttattggttctgatgcaacgactctgcaatttcaattggctgtagtttcagtagtcagaattgttttataacatctttgcttgtaagctgagttttggttaccttggttcttgccagCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA