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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtattttttccgagaacatcccatattttttaaatctttgatgaactgttctgaattttggcggcattttttggggctgtttttacactgttgtaaaatactatctcagTTGTACATATGGTTCCACAACAAGAAAGGTGAAGCATCCTCACCAATATTTGTGTTAAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCACG

Basic information

species Glycine max
transcript GLYMA03G32620.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208201163|gb|GD996604.1|GD996604
EST:     TTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAG                         TTGTACATATGGTTCCACAACAAGAAAGGTGAAGCATCCTCACCAATATTT
genomic: TTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGgtagtatttt ... actatctcagTTGTACATATGGTTCCACAACAAGAAAGGTGAAGCATCCTCACCAATATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttggcggcattttttggggctgtttttacactgttgtaaaatactatctcagTTGTACATATGGTTCCACAACAAGAAAGGTGAAGCATCCTCACCAATATTTGTGTTAAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCACG
                                              ctatctc  CT-rich tract
                                    ttgtaaaatactat  TA-rich tract