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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatcagtaaatagatgcttgaaatcaagtaacatattaaccaggactgcttgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTATATGCAGCAGGACTGGGCC

Basic information

species Glycine max
transcript GLYMA03G32410.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32410.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G04080.2 (Arabidopsis thaliana), 3'ss of exon 1
------------------------------------------------------------------gtgcatc-agtaaatagatgc-ttgaaatcaagtaacatattaaccaggactgcttgttcatt--tgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTATATGCAGCAGGACTGGGCC
                                                                   ||  || | | | | |||   |     ||    | |  ||    ||    |  |  |  | |  |||| |||||||||||||||||  || | ||| |||||||| |||| |||||| | |||  | ||||| ||||||||||| |||||||| |||||||||||||||  |
gtaaatgcagtgtttggcagtatcatgcattcaaagagtgaatccttttctccatagaactcgtgtttgtctctattgattggatatgtctgtttctttcagctcatatgacattctttttactataatgctgttgcagGCTTTTTGAACGAGCTTTGGTTTACGTTGGAACTGATTTTCTTTCCTCTCCGTTGTGGGACAAATACATTGAGTATGAGTACATGCAGCAGGACTGGAGC

upper sequence: GLYMA03G32410.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------gtgcatc-agtaaatagatgc-ttgaaatcaagtaacatattaaccaggactgcttgttcatt--tgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTATATGCAGCAGGACTGGGCC
                            ||  || | | | | |||   |     ||    | |  ||    ||    |  |  |  | |  |||| |||||||||||||||||  || | ||| |||||||| |||| |||||| | |||  | ||||| ||||||||||| |||||||| |||||||||||||||  |
gaatccttttctccatagaactcgtgtttgtctctattgattggatatgtctgtttctttcagctcatatgacattctttttactataatgctgttgcagGCTTTTTGAACGAGCTTTGGTTTACGTTGGAACTGATTTTCTTTCCTCTCCGTTGTGGGACAAATACATTGAGTATGAGTACATGCAGCAGGACTGGAGC

upper sequence: GLYMA03G32410.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------gtgcatcag-taaatagatgcttgaaatcaagtaacatattaaccaggactgcttgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTATATGCAGCAGGACTGGGCC
                                    |||| | | ||||  |||| |  |      ||  |||| | | |    || ||| ||    ||||||||||| |||||||| ||| |||||||||| ||||||||||| || || |  ||||| |||||||||| ||| ||||||||||||   |||||||| ||| | 
acattagttccgctgtctcgcattcatggatgttcttgcaacggctaaagtgatgtt--atgatgtgtgtcataatgatc---tctcctttttatggtgtttcagGCTGTTTGAACGGGGACTAGCTTATGTAGGAACAGATTACCTGTCATACCCCCTTTGGGATAAATTCATAGAATATGAGTATTCACAGCAGGAGTGGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgcttgaaatcaagtaacatattaaccaggactgcttgttcatttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTATATGCAGCAGGACTGGGCC
                      tattaac  putative branch site (score: 1)
                                             tttgtttc  putative PPT
              aagtaacatattaa  TA-rich tract