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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacaaaacttttcatctttaattttgccacagatactaccggattagttaaatgaattgcattaaactgaacaactgttgttctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA

Basic information

species Glycine max
transcript GLYMA03G31600.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G31600.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 3'ss of exon 6
gttacaaaacttttcatctttaattttgccacagatactaccggattagttaaatgaattgcattaaactgaacaactgttgttctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
           |||  | |||   |    |||| ||        |||   |   |||  | | | |||             |||  ||   ||||||||| || |||||||||||||| ||||||||||| |||||| | || 
--------gtcttttttgtttttctgcatcaca-atgtcttgtcattctctggctgagatac-taaaa-------------gtttcttaaatttgcagGCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACG

upper sequence: GLYMA03G31600.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G159295_T01 (Zea mays), 3'ss of exon 6
gttacaaaacttttcatctttaattttgcc--acagatactaccggattagttaaatgaattgcattaaactgaacaactgttgttctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
          || |  | | |   ||| ||  || || |  |||  || ||||      ||||  ||    |||  |  |   | | ||    | ||||||| |||||||||||| |||| ||||||||||| |||||| | || 
--------gtttgtattttgtttctttacctgacggacataacct-atcagttgtc---attgtcttgg-ttgagtatttaaagctattataatctgcagGCATATTTCATGCAAGTTGATGGCACATTAAACAAATTGACAACG

upper sequence: GLYMA03G31600.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0141g00590.t01 (Vitis vinifera), 3'ss of exon 6
gttacaaaacttttcatctttaattttgccacagatactaccggattagttaaatgaattgcattaaactgaacaactgttgttctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
                  | ||| | |    || || | |     || ||||||   ||     | || |  |  |    |  || |    ||||||||| || || |||||||||||||||||||| ||||||||  |||| 
----------------gttgtaactgttatccaaatgccatttattttgttaaacacat---gctgaattctaagatgaatcctcctaaa-tttgcagGCTTACTTTATGCAAATTGACGGCACATTGAATAAATTATCCACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932940|gb|BU550079.1|BU550079
EST:     CAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAG                         GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
genomic: CAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAGgttacaaaac ... gcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
EST: gi|13312668|gb|BG406319.1|BG406319
EST:     CAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAG                         GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
genomic: CAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAGgttacaaaac ... gcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattagttaaatgaattgcattaaactgaacaactgttgttctttgcctttgcagGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA
                                    ttgttctttgccttt  CT-rich tract
      ttaaatgaatt  TA-rich tract