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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagccattagatcacaattttgttttgctagcactgaaccagccataaacaattataaataacttgtgctctaaaattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCTTCTTGGCGATGGTGAGAAGCGACGGTACTTTGGATTGAAGACAGACGC

Basic information

species Glycine max
transcript GLYMA03G31340.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193431175|gb|FK398587.1|FK398587
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACA
EST: gi|193639006|gb|FK586017.1|FK586017
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATA
EST: gi|208333430|gb|GE126195.1|GE126195
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTATGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|207826240|gb|GD799071.1|GD799071
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGACCAGGAAGACAT
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGG-CCAGGAAGACAT
EST: gi|193674504|gb|FK619962.1|FK619962
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193726825|gb|FK656903.1|FK656903
EST:     AAAATGAAGAGCAGACATGTTGCAGGAACCATTAACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACA
genomic: AAAATGAAGAGCAGACATGTTGCAGGAACCATTA-CCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACA
EST: gi|193310198|gb|FK274080.1|FK274080
EST:     AAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: AAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|207713581|gb|GD695256.1|GD695256
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193642053|gb|FK593663.1|FK593663
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAA-GA                         ATGTTGTGCTAGATA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATA
EST: gi|193487608|gb|FK449719.1|FK449719
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193335624|gb|FK301850.1|FK301850
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAA-GA                         ATGTTGTGCTAGATATATGCACGGATTTAC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTAC
EST: gi|208092117|gb|GD890988.1|GD890988
EST:     GAAAATGAAGAGCAGACACGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGA
EST: gi|208108627|gb|GD907101.1|GD907101
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208304818|gb|GE106159.1|GE106159
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGA
EST: gi|207740966|gb|GD714344.1|GD714344
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAA-GAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193556208|gb|FK514777.1|FK514777
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGAT
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGAT
EST: gi|208149642|gb|GD948206.1|GD948206
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGC
EST: gi|193710288|gb|FK645520.1|FK645520
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193390439|gb|FK356415.1|FK356415
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208197041|gb|GD995868.1|GD995868
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCA
EST: gi|207818758|gb|GD792021.1|GD792021
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193494765|gb|FK463593.1|FK463593
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         AATGTTGTGCTAGATA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagA-TGTTGTGCTAGATA
EST: gi|193484532|gb|FK451616.1|FK451616
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAA
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAA
EST: gi|208288992|gb|GE085369.1|GE085369
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTTGTGCTAGATATATGCACGGATTTACCAGCAT
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTT-GTGCTAGATATATGCACGGATTTACCAGCAT
EST: gi|193493966|gb|FK461822.1|FK461822
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208208293|gb|GE004252.1|GE004252
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208284148|gb|GE088168.1|GE088168
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCGGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208191270|gb|GD991988.1|GD991988
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ACGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208240225|gb|GE042335.1|GE042335
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|193730605|gb|FK665775.1|FK665775
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
EST: gi|208276076|gb|GE074314.1|GE074314
EST:     CAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATG
genomic: CAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATG
EST: gi|193695684|gb|FK633456.1|FK633456
EST:     GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGA                         ATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC
genomic: GAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAgtaagcagcc ... aattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcactgaaccagccataaacaattataaataacttgtgctctaaaattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCTTCTTGGCGATGGTGAGAAGCGACGGTACTTTGGATTGAAGACAGACGC
               ataaacaattataaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcagccattagatcacaattttgttttgctagcactgaaccagccataaacaattataaataacttgtgctctaaaattctgcagATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCTTCTTGGCGATGGTGAGAAGCGACGGTACTTTGGATTGAAGACAGACGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA