Sequence
atgc intronic sequence ATGC exonic sequencegtttgttggttaatagaatttgttttcccttttattttctgttgaatttgtttcaagcaacatgggtgatagtcttccttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
Basic information
species | Glycine max |
transcript | GLYMA03G29010.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G29010.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgttggttaatagaatttgttttcccttttattttctgttgaatttgtttcaagcaacatgggtgatagtctt---ccttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
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----gtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggt-caaatatagtaaccatttcttttggtttcttttccagGATCTGCTCCACTCACTGCTGTGCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCAACAGAACCTCCCAATGAAGGTTT
upper sequence: GLYMA03G29010.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgttggttaatagaatttgttttcccttttattttctgttgaatttgtttca-agcaacatgggtgatagtcttccttcttt-cagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
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-----gtaagtaaaatcaaacacatgcacaattttcaccaatgatttttgaataacagtttcagtaatgattgttttgcaccttttcagGATCTGCGCCACTCACCGCAGTGCAACTGCTTTGGGTGAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCGACCGAACCTCCCAACGAAGGTTT
upper sequence: GLYMA03G29010.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------gtttgttggttaatagaatt---tgttttcccttttattttctgttgaatttgtttcaa--gcaacatgggtgatagtcttc----cttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
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gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192300347|gb|FG991449.1|FG991449EST: AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTG GATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
genomic: AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggt ... cttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
EST:
gi|193472125|gb|FK435210.1|FK435210EST: AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTG GATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
genomic: AGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGgtttgttggt ... cttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttctgttgaatttgtttcaagcaacatgggtgatagtcttccttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
tagtcttccttctttc CT-rich tract
aatttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttggttaatagaatttgttttcccttttattttctgttgaatttgtttcaagcaacatgggtgatagtcttccttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA