1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtcttgtttgcttatttcaattctttgtcctacttcagcatgtatgactagcaaagtcttatcaatggtcctctcaataaaatttgattttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAG
species | Glycine max |
transcript | GLYMA03G24280.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTG GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGEST: gi|26268807|gb|CA819870.1|CA819870
genomic: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgt ... ttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
EST: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTG GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGEST: gi|193523356|gb|FK482711.1|FK482711
genomic: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgt ... ttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
EST: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTG GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
genomic: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgt ... ttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
tgactagcaaagtcttatcaatggtcctctcaataaaatttgattttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAG
atttgat putative branch site (score: 5)
ttttgtcttt CT-rich tract
aataaaatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcttgtttgcttatttcaattctttgtcctacttcagcatgtatgactagcaaagtcttatcaatggtcctctcaataaaatttgattttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACTACACATGCTGTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT