1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttctcattcatttttgaatttttttactggcacttcattaatttattaattcacgacaacagaattggaaaagctcactccatttattctttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATG
species | Glycine max |
transcript | GLYMA03G23870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAG GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACEST: gi|151407763|gb|EV277578.1|EV277578
genomic: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcac ... ttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
EST: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAG GATTTGGGCTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACEST: gi|23053050|gb|BU577541.1|BU577541
genomic: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcac ... ttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
EST: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAG GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
genomic: TCTTCCAGTACTCTCCAAGGACTATCACGTCATAGCCTTTGACTGGCTAGgtaagatcac ... ttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACAC
ttaattcacgacaacagaattggaaaagctcactccatttattctttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATG
ctccatttattctttc CT-rich tract
atttattctttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcattcatttttgaatttttttactggcacttcattaatttattaattcacgacaacagaattggaaaagctcactccatttattctttcatctcagGATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATG
- - cattcat
- - - - - - - - - - - -ttactgg
- - - - - - - - - - - - - - - cacttca
- - - - - - - - - - - - - - - - - - - - - - - - - -cacgaca