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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttgaattggcttgtgtgttatttaacttgggaatgtgttatgtatgcatacaagttatagtcacttgaaagcctatttaacttgtctgtgatgatatgcagCCACTTGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG

Basic information

species Glycine max
transcript GLYMA03G22370.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22370.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0333g00020.t01 (Vitis vinifera), 3'ss of exon 6
gtgggttgaa------ttggcttgtgtgttatttaac---ttgggaatgtgttatgtatgcatacaagttatagtcacttgaaagcctatttaact-----tgtctgtgatgatatgcagCCACTTGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG
||| |||  |      |||   | |   |  ||| |    | || ||   | | |   |   |   |   |||      | ||||| |  |  | |     | | | | ||||| ||||| ||  |||||| |||   ||  | ||||| ||||||||||||||||||||||||||||||||||||
gtgagttttactacacttgatatatagatcctttcatgggtgggaaagaggattttggtcggtttgatcaataaattaattaaagcattctggaatattgatttttctcatgatttgcagTCAAGTGTAACAGGACGAAAACCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacaagttatagtcacttgaaagcctatttaacttgtctgtgatgatatgcagCCACTTGTAACGGGAGAGAAGACACTTCCAGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAG
                            atttaac  putative branch site (score: 3)
                           tatttaactt  TA-rich tract