1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaatgctagttaatacttattaatgtgaatgatgaccttttctctttcttttttttatggatttaggacatggtttctgatgtcatcttacattttttttgcattcttgtagTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG
species | Glycine max |
transcript | GLYMA03G21690.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAGEST: gi|192319167|gb|FK009107.1|FK009107
genomic: CAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAG
EST: CAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTEST: gi|208181074|gb|GD980155.1|GD980155
genomic: CAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTT
EST: GGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCCEST: gi|192332848|gb|FK026849.1|FK026849
genomic: GGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCC
EST: CAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCC
genomic: CAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCC
tggatttaggacatggtttctgatgtcatcttacattttttttgcattcttgtagTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG
atcttac putative branch site (score: 3)
ttttttttgcattctt CT-rich tract
atcttacatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgctagttaatacttattaatgtgaatgatgaccttttctctttcttttttttatggatttaggacatggtttctgatgtcatcttacattttttttgcattcttgtagTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAAAAGGGCCATGACGATGAAGGAGAGCTGTTTGAATTCAAAACTGATGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT