Sequence
atgc intronic sequence ATGC exonic sequencegtgaggcatatatatgatttcatttagcgaatttatgatgttatgttgtgtttatactttccagtccagtctgtctaaaaggtcatgtggatcttgatcttttgggaatgttttctgctatacagAGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACG
Basic information
species | Glycine max |
transcript | GLYMA03G21610.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G21610.2 (Glycine max), 3'ss of exon 6
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgaggcatatatatgatttcatttagcgaatttatgatgttatgttgtgtttatactttccagtccagtctgtctaaaaggtcatgtggatcttgatcttttgggaatgttttctgctatac------agAGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACG
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----------------------------------------gtatgttttg---gtactttgtattgta-ttaattgaaatggttttcgctctttgaatgtcttataaacaagttttgttctgtttctgaagAGAATTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGCATCTATGCCTCCTTACACTGAATATGTGTCCACACG
upper sequence: GLYMA03G21610.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0151g00350.t01 (Vitis vinifera), 3'ss of exon 6
--------gtgaggcatatatatgatttcatttagcgaatttatgatgttatgttgtgtttatactttccagtccagtctgtctaaaaggtcatgtggatcttgatcttttggga-atgttttctgctatacagAGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACG
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gtatgaagttgacttctacaaaattatgcacttgtgcagtctatgatttggaattttatttgcatcttcatgaagaat-tgtgtaggct-ttatctaatagtgtatattatcaaacaccatttctgtcttcaagAGAATTTGCTGGTGACAAACAATGTGATTAAAATTGCTGACTTCGGACTGGCTAGAGAAGTATCATCTATGCCTCCTTATACTGACTATGTGTCCACACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6502102|gb|AW203475.1|AW203475EST: ACTTAGTCACATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTG AGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGG
genomic: ACTTAGTCACATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGgtgaggcata ... tgctatacagAGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtctaaaaggtcatgtggatcttgatcttttgggaatgttttctgctatacagAGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACG
ttttctgct CT-rich tract
aatgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaggcatatatatgatttcatttagcgaatttatgatgttatgttgtgtttatactttccagtccagtctgtctaaaaggtcatgtggatcttgatcttttgggaatgttttctgctatacagAGAATATGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT