1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cagaccatgtctagtataaattaggtggttcattgatgtaccaaactcaatgaagaacaaaaatatgatattcacagcattcacttttgttcttttacagGCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGG
species | Glycine max |
transcript | GLYMA03G15830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCAT GCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCEST: gi|11689140|gb|BF596816.1|BF596816
genomic: GAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATgtaagctttt ... tcttttacagGCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCC
EST: CTTGAGTGGTAAACATATTCCACCAAGCCAT GCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCC
genomic: CTTGAGTGGTAAACATATTCCACCAAGCCATgtaagctttt ... tcttttacagGCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCC
ctcaatgaagaacaaaaatatgatattcacagcattcacttttgttcttttacagGCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGG
ttcacttttgttcttt CT-rich tract
aacaaaaatatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaccatgtctagtataaattaggtggttcattgatgtaccaaactcaatgaagaacaaaaatatgatattcacagcattcacttttgttcttttacagGCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -catgtct
- - - - - - - - - - - -ggtggtt
- - - - - - - - - - - - - - - - -tgatgta
- - - - - - - - - - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaca