1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagctatgataaatagaacttactacatatgacattgtattttaatttgaagttgattatgattagatacctgattcagcccttggttatctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGAGAAAGAGTTTCAAACAATTACCGAGGAAAACCGCAACAAACAAAAGAAA
species | Glycine max |
transcript | GLYMA03G10900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAG CATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGAEST: gi|298181806|gb|HO025981.1|HO025981
genomic: TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGgtacttgtga ... ctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGA
EST: TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAG CATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGAEST: gi|6916126|gb|AW397656.1|AW397656
genomic: TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGgtacttgtga ... ctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGA
EST: TTGTATCGGGGATTTGTGCCCAATGCTGTGAAAAACTTACCAAACAGCAG CATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGA
genomic: TTGTATCGGGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGgtacttgtga ... ctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGA
tttgaagttgattatgattagatacctgattcagcccttggttatctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGAGAAAGAGTTTCAAACAATTACCGAGGAAAACCGCAACAAACAAAAGAAA
acctgat putative branch site (score: 4)
ttatctct putative PPT
attatgattagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctatgataaatagaacttactacatatgacattgtattttaatttgaagttgattatgattagatacctgattcagcccttggttatctctatacagCATCAGGCTTACTACATATGACATTGTCAAACGCCTAATTGCAGCTAGTGAGAAAGAGTTTCAAACAATTACCGAGGAAAACCGCAACAAACAAAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-agctatg
- - - - - aaatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatt