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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataaattagcctgttcaagtattttcaccggatcttcatctgcttatgaaccatattgtgacttttctagGTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTT

Basic information

species Glycine max
transcript GLYMA03G08120.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatataaattagcctgtt-caagtattttcaccggatctt-catctgcttatgaaccatat----tgtgacttt-tctagGTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTT
     | || | |  | |      |||  |  || | || | ||| |  | ||   |  | |    ||| |  |  |  ||||||| ||||| |||||  | || |||||| | ||||||||||| || || || || ||||||||  | || ||||||||||||||||| || |||||||
----gtgaaatggtttttcatttatatcatttcctgttcatgcatttattgataggcattgtgcaatgtaatctcgtgcagGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATAGCTCCATATATTGCTGTAAACTTTT

upper sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 3'ss of exon 6
gtatataaattagcctgttcaagt-attttcaccggatcttcatctgcttatg-aaccata---ttgtgactt--ttctagGTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTT
   ||| | | | |   ||||  |  | || |  | |       ||  |||||  |  ||    || |||  |  ||  ||||||| || | ||| ||||||||||||||| ||||||| |||||  | || ||||| ||||||||  |||||||||| || || ||||| ||||||||||
--gtatga-tcaactgattcagattgtgtttatggcaagaaggccttgttatgtgaagatgcatttatgagctgatttcagGTTGCCTTAAACATACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146319|gb|AW508241.1|AW508241
EST:     TCCTGAGATTACGATTAGCTGTTGAACCTGGTTATCGAACAATGTCAGAG                         GTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGC
genomic: TCCTGAGATTACGATTAGCTGTTGAACCTGGTTATCGAACAATGTCAGAGgtatataaat ... acttttctagGTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGC
EST: gi|15287432|gb|BI471323.1|BI471323
EST:     TCCTGAGATTACGATTAGCTGTTGAACCTGGTTATCGAACAATGTCAGAG                         GTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGC
genomic: TCCTGAGATTACGATTAGCTGTTGAACCTGGTTATCGAACAATGTCAGAGgtatataaat ... acttttctagGTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtattttcaccggatcttcatctgcttatgaaccatattgtgacttttctagGTTGCGTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTT
                                              cttttct  CT-rich tract
     attttca  TA-rich tract