1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatatagttttattaatatatttaccgatatgatgcatcttcctatcctttgcttagtaaactaccaatctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAA
species | Glycine max |
transcript | GLYMA03G07420.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|208258591|gb|GE056368.1|GE056368
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGGTGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|193567991|gb|FK524328.1|FK524328
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|193424103|gb|FK391590.1|FK391590
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|193639633|gb|FK590074.1|FK590074
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGEST: gi|207847082|gb|GD819553.1|GD819553
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAG
EST: AGAATGAAG-TTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|14009221|gb|BG725825.1|BG725825
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|208186117|gb|GD986774.1|GD986774
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|193589741|gb|FK544657.1|FK544657
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: TGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|208300711|gb|GE100630.1|GE100630
genomic: TGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|193656848|gb|FK606288.1|FK606288
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|193536766|gb|FK491826.1|FK491826
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAEST: gi|193474294|gb|FK441999.1|FK441999
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGA
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAEST: gi|13479974|gb|BG509317.1|BG509317
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGA
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|208058230|gb|GD859801.1|GD859801
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAGTGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|208315932|gb|GE114400.1|GE114400
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|207707572|gb|GD689058.1|GD689058
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|18039999|gb|BM308293.1|BM308293
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACEST: gi|208236030|gb|GE033394.1|GE033394
genomic: AGAATGAAGTTTATGCAATTGATATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
EST: TATCGTAGCAAGTACTGGAGATGGCAAG CCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
genomic: TATCGTAGCAAGTACTGGAGATGGCAAGgtaatatagt ... tctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGAC
accgatatgatgcatcttcctatcctttgcttagtaaactaccaatctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAA
tctcttgc CT-rich tract
ttagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatagttttattaatatatttaccgatatgatgcatcttcctatcctttgcttagtaaactaccaatctcttgcagCCTAAGCTTTTGGATGAAAAGCAGACAACTATTTATAAGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG