1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttaataactaaacagttttattcttctcttggcctaaatctacattctaattgttttcttgataacttattattgacttttccattaacattttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGAT
species | Glycine max |
transcript | GLYMA03G02370.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAG CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGEST: gi|22523124|gb|BU081935.1|BU081935
genomic: CTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGgtaatccttg ... attttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACG
EST: CTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAG CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGEST: gi|15285584|gb|BI469475.1|BI469475
genomic: CTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGgtaatccttg ... attttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACG
EST: CTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAG CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGEST: gi|298174687|gb|HO014718.1|HO014718
genomic: CTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGgtaatccttg ... attttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACG
EST: CTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAG CCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACG
genomic: CTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTAGCTCTGCTTGCTGAGgtaatccttg ... attttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACG
ttctaattgttttcttgataacttattattgacttttccattaacattttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGAT
cattaac putative branch site (score: 2)
ttttatc CT-rich tract
ttttcttgataactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaataactaaacagttttattcttctcttggcctaaatctacattctaattgttttcttgataacttattattgacttttccattaacattttatcagCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACGGCTATTCCTGGAATCTCAGATATGATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - ctaaaca
- - - - - - - - - - - - - - - - gcctaaa
- - - - - - - - - - - - - - - - - - - - ctacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattaa