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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaatgatttaaattgtgttctcattttttccatttctttaacatttttaatgcttcattttttgcaacgtgctccttctaagttggagaaaaaattattctaaatttttttaaaatgttttagGCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAG

Basic information

species Glycine max
transcript GLYMA03G02080.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G02080.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0048g01140.t01 (Vitis vinifera), 3'ss of exon 6
gtagcaatgatttaaattgtgttctcattttt--tccatttctttaacatttttaatgcttcattttttgcaacgtgctccttctaagttggag----aaaaaattattctaaatttttttaaaatgttttagGCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAG
   | | |||| ||  |   |  || |||  |  |   |    || |  |||| |||     | ||  |   | |   || || | ||    |     | || |     |   ||   ||| |||  | | ||||||||||||||||||||  |||| || ||||||||| | ||| | || |||||||||||||
---gtattgatgtatttctggagctaattcctagtttgtactgtttattttttcaat-tgaaacttccttttaggcattctttttgaggaaaaagttcataagacacaacattatgccttttaaacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712431|gb|BW671283.1|BW671283
EST:     CTATTTGTTCTCTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAG                         GCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGG
genomic: CTATTTGTTCTCTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGgtagcaatga ... aatgttttagGCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctccttctaagttggagaaaaaattattctaaatttttttaaaatgttttagGCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAG
                             ttctaaa  putative branch site (score: 2)
              ttggagaaaaaattat  TA-rich tract