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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT

Basic information

species Glycine max
transcript GLYMA03G01300.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 6
lower sequence: AT1G01740.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                                                                           || |    ||||  |   |     |   | || || |     |    | |  ||||  | ||   |  |   |   |  |  |  ||||||| | ||| |||| ||||| || || ||||||||||||||||||||||| |||||||  || |||||||| || || || |||
--------------------------------------------------------------------------gtgaaattgatttgcaccctcctcgtaggtcatattatttccaa--caatttctaca--acttgagacttaagtgtgtgttgatacagGGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCAT

upper sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 6
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                                                                            |||   ||||      ||  | |  ||| || |  |  |    |  |||   || |       | | | | || ||   |||  ||||||| | || ||||| ||||||||||| || |||||||||||||||||||| |||||||| || || ||||| || || || |||
----------------------------------------------------------------------------gtacatcattggttttttctccaagattcatatggt--tgagattaagttgcacgt-------tctgtttgttattgtatttacagGGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCAT

upper sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 6
gtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                                                            |||  ||  | | ||||||||  || ||| |  |   ||| || |||| | |  |  | |  |   |    |   ||| |||  ||  | |||||| | |||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| ||||||||||| || || |||
-----------------------------------------------------------gatttgatgtagagtctgtatcagatataata--taggaataatatatggtattttgtaatctaactaatttttgcttcatatg-cttgtttttgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409998|gb|EV279806.1|EV279806
EST:     AAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTG                         GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTG
genomic: AAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgcctta ... tgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                           tttcttatatctcttc  CT-rich tract
                       atgatttcttatat  TA-rich tract