1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagcgctttcttctttgtttgtttttcttttatagtattttagatactgttcctaaccctgactctttttatttttgtagAGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCA
species | Glycine max |
transcript | GLYMA03G00470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGTAACATATAGCAGTCATGAACCAAGCAATCCCCGAGATGCCAAT AGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGACEST: gi|13240090|gb|BG359399.1|BG359399
genomic: ATTTGGTAACATATAGCAGTCATGAACCAAGCAATCCCCGAGATGCCAATgtgagcgctt ... atttttgtagAGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGAC
EST: ATTTGGTAACATATAGCAGTCATGAACCAAGCAATCCCCGAGATGCCAAT AGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGAC
genomic: ATTTGGTAACATATAGCAGTCATGAACCAAGCAATCCCCGAGATGCCAATgtgagcgctt ... atttttgtagAGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGAC
tcttttatagtattttagatactgttcctaaccctgactctttttatttttgtagAGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCA
ctctttttatttttgt CT-rich tract
tatagtattttagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgctttcttctttgtttgtttttcttttatagtattttagatactgttcctaaccctgactctttttatttttgtagAGAGTTGTGATAAATTTATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT