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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgggtgatgtgcttgaaggatgataataaaatgataaatgatagaagtcttttttttgtaatacatcgtgaacatatttcctctaaacctatattagatatgcagGCTTTAATTTTGATACAGAATATGGTGAACAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACGAGGTGAATCAAAGTCTTTTCCTCTTGT

Basic information

species Glycine max
transcript GLYMA02G46430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46430.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0090g01210.t01 (Vitis vinifera), 3'ss of exon 6
-gtcgggtgatgtgcttgaaggatgataataaaatgataaatgatagaagtcttttttttgtaatacatcgtgaacatatttcctctaaacctatattagatatgcagGCTTTAATTTTGATACAGAATATGGTGAACAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACGAGGTGAATCAAAGTCTTTTCCTCTTGT
 |  || || |   | |  |  |||     |  || ||  ||  ||   |  | |   |   |||  |  ||       || ||||    |   | ||   | |||||| ||| | |||||||||||| |||||||  ||||  | || || |||||||| || |||||||| |||| || ||||||| ||||||| ||||| || ||
aggaggttgtttcacctccaaaatgcatcaatgattatttattctatgggg-tctagctcccaatgaagtgtc----cgttacctcgttgc---tgttctttttgcagGTTTTCACTTTGATACAGAAGATGGTGATAAAGTCCTTCCAGGCTTCCTTGACTCAATAATTGGCATTCGACAAGGTGAAACAAAGTCCTTTCCACTAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtaatacatcgtgaacatatttcctctaaacctatattagatatgcagGCTTTAATTTTGATACAGAATATGGTGAACAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACGAGGTGAATCAAAGTCTTTTCCTCTTGT
                              ctctaaa  putative branch site (score: 3)
                                       tatattagatat  TA-rich tract