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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatttctcgttttactaaatatgatcattcagattggttttatttatttattatttgttcttttcttctaaaaatctaagttcagcaattagcaataatgcagGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAG

Basic information

species Glycine max
transcript GLYMA02G46350.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058204|gb|CA801118.1|CA801118
EST:     AAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATG                         GTAGTTCTCAATTGCAGCCATC
genomic: AAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGgtaatatatt ... aataatgcagGTAGTTCTCAATTGCAGCCATC
EST: gi|213610862|gb|DB963192.1|DB963192
EST:     AAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATG                         GTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGT
genomic: AAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGgtaatatatt ... aataatgcagGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGT
EST: gi|213591385|gb|DB959899.1|DB959899
EST:     AAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATG                         GTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGT
genomic: AAGAAAAAGCATAAACAAAAAGAGGTTGATGCAAATGgtaatatatt ... aataatgcagGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatttgttcttttcttctaaaaatctaagttcagcaattagcaataatgcagGTAGTTCTCAATTGCAGCCATCACCATCAAGTAATTGGTTTTCTTCAAAGTCAACAAAAAAG
                 ttctaaa  putative branch site (score: 2)
            ttttcttctaaaaat  TA-rich tract