1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttatgtttgtcttattttttatacttatgtacataatatggtttatgggaaaacttacttttggagttttttatattaattgttttcctttgatgcagCCTCTTGTATCAGGTGCTGCATTGGGATTGGAAGGGCAG
species | Glycine max |
transcript | GLYMA02G46300.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGGAAAG TEST: gi|208266973|gb|GE062340.1|GE062340
genomic: TCCTTGGAAAGgtaaatctta ... tttgatgcag-
EST: TCCTTGGAAAG TEST: gi|207699690|gb|GD678947.1|GD678947
genomic: TCCTTGGAAAGgtaaatctta ... tttgatgcag-
EST: ATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAG CCTCTTGTATCAGGTGEST: gi|9899477|gb|BE608445.1|BE608445
genomic: ATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAGgtaaatctta ... tttgatgcagCCTCTTGTATCAGGTG
EST: ATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAG CCTCTTGTATCAGGTGCTGCATTGGGATTGGAAGGGCAG
genomic: ATGCTCCTACCCGGTACTTGATCAGTGATTGCTGTGTGGTCCTTGGAAAGgtaaatctta ... tttgatgcagCCTCTTGTATCAGGTGCTGCATTGGGATTGGAAGGGCAG
tatgggaaaacttacttttggagttttttatattaattgttttcctttgatgcagCCTCTTGTATCAGGTGCTGCATTGGGATTGGAAGGGCAG
ttgttttccttt CT-rich tract
ttttggagttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttatgtttgtcttattttttatacttatgtacataatatggtttatgggaaaacttacttttggagttttttatattaattgttttcctttgatgcagCCTCTTGTATCAGGTGCTGCATTGGGATTGGAAGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -tgtttgt
- - - - - - - - - - - - - -tatgtac