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gtgaggcaataaacaatcaaaagttatccttaatctacttggggctgtacagtcataaattcaaatagcttgcctttactcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAG
species | Glycine max |
transcript | GLYMA02G45610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|208041747|gb|GD843463.1|GD843463
genomic: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: TGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|208146996|gb|GD950613.1|GD950613
genomic: TGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: TCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGAC-ATTTTCGTGTCTACAAEST: gi|4282637|gb|AI440556.1|AI440556
genomic: TCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: GTTGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|19271064|gb|BM887320.1|BM887320
genomic: GTTGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|192323617|gb|FK017483.1|FK017483
genomic: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|151404405|gb|EV274215.1|EV274215
genomic: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: GGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|208080975|gb|GD873831.1|GD873831
genomic: GGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: AAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|19271087|gb|BM887343.1|BM887343
genomic: AAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAEST: gi|193638162|gb|FK586656.1|FK586656
genomic: AGTGGTCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
EST: TCTGTGATGGAAAGGCGAGAAG GTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
genomic: TCTGTGATGGAAAGGCGAGAAGgtgaggcaat ... actcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAA
atctacttggggctgtacagtcataaattcaaatagcttgcctttactcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAG
ccttaat putative branch site (score: 4)
cctttactc putative PPT
tcataaattcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcaataaacaatcaaaagttatccttaatctacttggggctgtacagtcataaattcaaatagcttgcctttactcatacagGTTGACAAATGAGCAAAGAGGAGCTATTGCTGACTATTTTCGTGTCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT