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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatcaattagttttggcatttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacagGATTGGGATGGACAAAGTGGTGGAACTATTGTGTCAGAAATATGTGGCTTCATCATTGTGCTCTCTGGAACAATAATGTTGCATGCGACTAAGGACTTCG

Basic information

species Glycine max
transcript GLYMA02G44980.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44980.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 3'ss of exon 7
----gtataatcaattagttttggcatttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacagGATTGGGATGGACAAAGTGGTGGAACTATTGTGTCAGAAATATGTGGCTTCATCATTGTGCTCTCTGGAACAATAATGTTGCATGCGACTAAGGACTTCG
     | |||| ||   | ||   |    |      | |  ||   ||       ||   | |    ||   |   | || | |   || ||||||  |  || |||||||||||||| |||||||| ||||  ||  | ||||||||||| ||||| ||  |||||||||||||||| ||  | ||| ||| ||| || ||||  |
aaccctgtaatgaaactggttcctctaccagccaagagttaatcgaat-----cattaattgcaatatgactacccagct-tatgagttgaaaaatgttattt-cagGATTGGGATGGTCAAAGTGGAGGAAGCATCATATCAGAAATATGCGGCTTTATTGTTGTGCTCTCTGGAACCATCTTATTGAATGTGACCAAAGACTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacagGATTGGGATGGACAAAGTGGTGGAACTATTGTGTCAGAAATATGTGGCTTCATCATTGTGCTCTCTGGAACAATAATGTTGCATGCGACTAAGGACTTCG
                    aagaacctatttacat  TA-rich tract