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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccattccatgcttctgttaccttattttcatccaatttgcaatattttctctcaaagcctttaacattaacacatttcatttcaaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATGGCATTTAACATCGTGGCTCGCATAGAAGATTTGCTATATGTGGATGACT

Basic information

species Glycine max
transcript GLYMA02G41980.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41980.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 6
------gttccattccatgcttctgttaccttattttcatccaatttgcaatattttctctcaaagcctttaacattaacacatttcatttcaaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATGGCATTTAACATCGTGGCTCGCATAGAAGATTTGCTATATGTGGATGACT
       |||   |||| |  | |||   ||  || |  |   |  |||| |   || ||    |   | | ||  | ||| |||   |||      |||||||| | || |||||||| || || ||||| |||||||| ||||| ||| ||||||||||||| |||||||| || || ||| |  ||||||| |||||| 
gttcaaattctcctccacggat-tgtcttctgtttgttcttggagatgcatttccttttcctcta-tttgtcactctgacaaattgt-ttttgtcttttcagGATGTGGGGAAATCCATTCTGGAAAGCTACTCAAGAGTTTTGGAAAGCCTGGCATTTAACATTGTGGCTCGTATTGATGATCTATTATATGTTGATGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024650|gb|CX711391.1|CX711391
EST:     CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAG                         GATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
genomic: CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGgttccattcc ... aaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
EST: gi|21888799|gb|BQ742012.1|BQ742012
EST:     CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAG                         GATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
genomic: CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGgttccattcc ... aaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
EST: gi|57576049|gb|CX549020.1|CX549020
EST:     CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAG                         GATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
genomic: CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGgttccattcc ... aaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
EST: gi|18733751|gb|BM527791.1|BM527791
EST:     CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAG                         GATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG
genomic: CAGGTCTCACTCAAACTACCTTGGATACCAGCAAGATCCAGTGCAACAAGgttccattcc ... aaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatattttctctcaaagcctttaacattaacacatttcatttcaaacattcagGATATTGGAAAATCCATACTAGAGAGCTATTCAAGAGTGTTGGAGAGCATGGCATTTAACATCGTGGCTCGCATAGAAGATTTGCTATATGTGGATGACT
                          cattaac  putative branch site (score: 2)
                     tttaacattaa  TA-rich tract