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...cttgcttagtaagcttattttgtttccaatatctcttgtatgttatctttagtaaattcatatgtactaatattggaatatctatctgttgagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
species | Glycine max |
transcript | GLYMA02G41810.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAGEST: gi|298165190|gb|HO011239.1|HO011239
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAGEST: gi|208261104|gb|GE060350.1|GE060350
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTGCTTACTTTTGGTTGGG-ACTTTATGGACAGEST: gi|208099247|gb|GD898762.1|GD898762
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
EST: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAG ATGCTGGAGCCTTG
genomic: TTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGgtacatacgt ... gagctgacagATGCTGGAGCCTTG
tctttagtaaattcatatgtactaatattggaatatctatctgttgagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
tactaat putative branch site (score: 1)
taaattcatatgtact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcttagtaagcttattttgtttccaatatctcttgtatgttatctttagtaaattcatatgtactaatattggaatatctatctgttgagctgacagATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
cttgctt
- - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatctg