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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcagtgagaaatctgtagtaactgagcaacttctttttttctacaagttgtgaagcatgaacagttattttttcttagtgattgtggtattatattagctgtgtagctacgtattgacacagGCTGCAATGAACGTAGGAGGGATAGTACTGAATGCACTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT

Basic information

species Glycine max
transcript GLYMA02G41560.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41560.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0019g01510.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------gtatgtcagtgag-aaatctgtagtaactgagcaact---tctttttttctacaa-------gttgtgaagcatgaacagttattttttcttagtgattgtggt-attatattagc-tgtgtagctac-gtattgacacagGCTGCAATGAACGTAGGAGGGATAGTACTGAATGCACTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT
                                  | |   |||  |  | |  |  || |||||| ||  |   ||| |     || ||       ||  |||| ||   |||  |  |   |  |  ||       | ||| |  || | |  |  |  || || |||   |||||||   |||| || || ||||| ||||||||||| |||||||| || || |||||||| ||||||||||||||||||||||||
gtaagtcagaagtacattatcctaaagaagaaaaggaaaccagacattagacattgagcaactgatcatttagatctgtacacttagaataaactagtactgaaacactcacaactgatgacttcttctgtccaaactgattttgctaacctaagatgtcactgtcttggtccagGCTGTGCTGAATGTGGGTGGGATTGTACTGAATGCTCTGGCTATAGAGCATTTTATTCTCCGGCACCCATGTGAATCAAAACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcttagtgattgtggtattatattagctgtgtagctacgtattgacacagGCTGCAATGAACGTAGGAGGGATAGTACTGAATGCACTGGCTATCGAACACTTTATTCTTCGGCACCCATGTGAATCAAAACAT
                                            tattgac  putative branch site (score: 2)
                    tattatatta  TA-rich tract