1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttgtccttatttcattttctgcatttcattctattgcgattaagtattataataagttttgtctgtaagtatgcttatgtagaatgtgtttcttgtagGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCTACTTTAGCTG
species | Glycine max |
transcript | GLYMA02G41500.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGGCGTTCCEST: gi|24136120|gb|BU926630.1|BU926630
genomic: TTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAGgtgaacaaat ... tttcttgtagGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGG-CGTTCC
EST: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAG GATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCA
genomic: CAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCATTGCTTGAATAAGgtgaacaaat ... tttcttgtagGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCA
gtattataataagttttgtctgtaagtatgcttatgtagaatgtgtttcttgtagGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCTACTTTAGCTG
tgtttctt CT-rich tract
ataataagttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccttatttcattttctgcatttcattctattgcgattaagtattataataagttttgtctgtaagtatgcttatgtagaatgtgtttcttgtagGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCTACTTTAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - ctattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg