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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttatggattgattatataccttgtagccgttttttatcttttaattttgtgttcaattttgcatcaagtgtagaaccagactgatgttttctccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTT

Basic information

species Glycine max
transcript GLYMA02G36960.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295491|gb|FG987105.1|FG987105
EST:     CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG                         TCATATAGCTTTAGAAGGGGGACATATCCCGTCTACTATATTTTCTGTTTC
genomic: CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... ttctccgcagTCATATAGCTTTAGAAGGGGGACATATCC-GTCTACTATATTTTCTGTTTC
EST: gi|58021429|gb|CX708170.1|CX708170
EST:     TTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG                         TCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
genomic: CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... ttctccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
EST: gi|57575838|gb|CX548809.1|CX548809
EST:     CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG                         TCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
genomic: CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... ttctccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
EST: gi|58025341|gb|CX712082.1|CX712082
EST:     CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG                         TCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
genomic: CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... ttctccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
EST: gi|51338422|gb|CO982288.1|CO982288
EST:     CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG                         TCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA
genomic: CTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... ttctccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtgttcaattttgcatcaagtgtagaaccagactgatgttttctccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTT
                                   gactgat  putative branch site (score: 3)
                                         tgttttctcc  CT-rich tract
        ttcaatttt  TA-rich tract