1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caaatacatagctgtgaagtttatttcctaaagtatgaaagagaagattatttgtatttgatagttgatactgagatctctgtgtttcccatgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTA
species | Glycine max |
transcript | GLYMA02G36560.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAG ACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGEST: gi|308098814|gb|HO760655.1|HO760655
genomic: TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttca ... atgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG
EST: AGCTATAAGTGGCCTCAT-CTTTTTGGCCCTTCTGATTGGCAACATGCAG ACATATCTTCAATCTCTCA-CATTAGGCTTGAGGAAATGAGAGTCAAAAGGEST: gi|193315843|gb|FK280999.1|FK280999
genomic: AGCTATAAGTGGCCTCATCCTTTTT-GCCCTTCTGATTGGCAACATGCAGgtatacttca ... atgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG
EST: TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAG ACATATCTTCAATCTCTCACTATTAGGCTTGAGGAAATGAGAGTCAAAAGG
genomic: TAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttca ... atgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGG
gattatttgtatttgatagttgatactgagatctctgtgtttcccatgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTA
agttgat putative branch site (score: 5)
tttcccat putative PPT
tttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatacatagctgtgaagtttatttcctaaagtatgaaagagaagattatttgtatttgatagttgatactgagatctctgtgtttcccatgattacagACATATCTTCAATCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - gctgtga
- - - - - - - - - - - - - - - - - - -aaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatactg