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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtctaattcaaaacaccaactcctaaatcatggtggtcttgtgattttattacatgatctgataattttctaatagtatatggctcaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT

Basic information

species Glycine max
transcript GLYMA02G35500.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G174204_T01 (Zea mays), 3'ss of exon 6
-------gtgtctaattcaaaacaccaactcctaaatcatggtggtcttgtgattttattacatgatctgataattttctaatagtatatggctcaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT
        | ||| |   |   ||  ||||  | | | |    || |    ||||||  |   || |||||  ||  | ||   ||   ||  |  ||  | | |||||||||| |||||||| |||||||| ||||| || ||||||||  |||| ||||| || ||||| |||||||| |||||||||||||| || || ||  |
gccttccatctcttaaagagttcataaacttttca-taagataggacacacgattttcctt--tgctctga--ataatttagctgttcttgttttccc--tgtacagCCAAGCAGTGGAAGAGAATGGTTACCAAAGCCACTTTTGTTGGAGCTGGATTTACAAGGAAACCACCAAAGTATGAGCGGTTCATTCGACCAACTGGTCT

upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G009876_T01 (Zea mays), 3'ss of exon 6
gtgtctaat---tcaaaacacc----aactcctaaatcatggtggtcttgtgattttattacatgatctgataattttctaatagtatatggctcaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT
 |||   ||   | || ||  |    |  | | | | ||| ||         |  || |    || |||||  |   | ||   |    |   |  |   |  ||||||||||| |||||||| |||||||| ||||| || ||||||||  |||| ||||| || ||||| |||||||| || ||||||||||| || || ||  |
-tgttccatctgttaagacttcataaatgttccataacatagta----cacaacattttcctttggtctga--acaatatagctgatcttcttttccttgtactcagCCAAGCAGTGGAAGAGAATGGTTACTAAAGCCACCTTTGTTGGAGCTGGATTTACAAGGAAACCACCAAAGTATGAACGGTTCATTCGGCCAACTGGTCT

upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G06360.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------------------------------gtgtctaattcaaaacaccaactc---ctaaatcatggtggtcttgtgattttattacatga---tctgataattttctaatagtat-----atggctcaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT
                                                                                         |    | ||| |  | |  |       ||| ||   | | |  |||||  ||  ||  || |   |   |||  ||  ||  | ||      |||  |  || | || |||| || ||||||||| |||||||||||||||||||||||||||| |||| ||| || || || ||||||||||||||||| ||||| |||||  | ||  |
gtatgtatttactttctaatccagatatagctacttgtttgttttgttatcactctatgtctttgtttaaacacttatcatcatatagagctattgattaaggaaatgactctagactagattgagtttgctttgtggattggttttattagtgttgaataggttcttacaaatactgaaaatgctttcccttattacagCTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTTTCACAAGGAAGCCTCCAAAGTACGAGCGTTTCATCCGTCCATCTGGTCT

upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0105g00280.t01 (Vitis vinifera), 3'ss of exon 6
gtgtctaattcaaaacaccaac---tcctaaatcatggtggtcttgtgattttattacatgatctgataattttctaatagtatatggctcac---catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT
   |   ||| |  |     |    | || ||  | ||| |  |    |    | | | | | || ||    |  ||| | | |||| ||  |     |||| |||||||||| |||||||||||||| || || || || || || || || | |||||| |||||||| || ||||| ||||| ||||| |||||  | |||||
---ttagattgagcatgtgcatatatgctgaa--aaggttgagtcacaaacccaatcccttacctaatg-cctcttaacaatctatgtctggcatgtcttttgcagCCAAGCAGTGGAAGAGGATGGTAACCAAGGCCACGTTCGTGGGACCAGCTTTTACAAGAAAACCCCCCAAGTATGAGCGATTCATCCGTCCTTCGGGATT

upper sequence: GLYMA02G35500.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ15002 (Selaginella moellendorffii), 3'ss of exon 6
gtgtctaattcaaaacaccaactcctaaatcatggtggtcttgtgattttattacatgatctgataattttctaatagtatat--ggctcaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT
                               |  ||  |||| ||  |||      | | | |||  |||   | |  | | |  |  ||    |  | |||| || || |||||| | |||||||| ||||| |||||||||||  | ||||| || || ||||| |||||||||||| |||| ||  | || |  || ||
-----------------------------gtactgttttctt-tgtctttcactttttaccggatggtttctcattgttttcttcgcgtcttggtgctccagCTAAACAGTGGAAGCGAATGGTTACTAAAGCCACATTTGTTGGAGCCGGTTTCACGAGGAAACCACCAAAGTACGAGAGGTTTATCAGACCCATGGGGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208078880|gb|GD874536.1|GD874536
EST:     GTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: GTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|15203872|gb|BI426640.1|BI426640
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|7478670|gb|AW666357.1|AW666357
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCCTGGT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCC-TGGT
EST: gi|6071298|gb|AW100685.1|AW100685
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|17519530|gb|BM188572.1|BM188572
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|298194398|gb|HO041046.1|HO041046
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAGAAGCTACATTTGTTGGGCCT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCT
EST: gi|15203893|gb|BI426661.1|BI426661
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|8285802|gb|BE023361.1|BE023361
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|20811431|gb|BQ295909.1|BQ295909
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|120491259|gb|EH219426.1|EH219426
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|192328211|gb|FK020444.1|FK020444
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|21995126|gb|BQ786654.1|BQ786654
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|192313774|gb|FK007646.1|FK007646
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|7588724|gb|AW704513.1|AW704513
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|151402809|gb|EV272622.1|EV272622
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|192313831|gb|FK007647.1|FK007647
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
EST: gi|6668126|gb|AW279577.1|AW279577
EST:     CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGA                         CCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT
genomic: CGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGAgtaagtaacc ... catttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttattacatgatctgataattttctaatagtatatggctcaccatttttcagCCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATT
                                            ccatttttc  CT-rich tract
                tgataattttctaata  TA-rich tract