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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctattctagaatctagaatctaattcttacttctccatttgttagttaaagtggattcattaattctacaaatatctccagGAGTTTGTTGCTAGTCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGACGCATTCATTTAAGTCCAACTTTGATTCTTGGC

Basic information

species Glycine max
transcript GLYMA02G32100.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G32100.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaatgctattctagaatctagaatctaattcttacttctccatttgttagttaaagtggattcattaattctacaaatatctccagGAGTTTGTTGCTAGTCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGACGCATTCATTTAAGTCCAACTTTGATTCTTGGC
     |  |  ||||||||     |||||  ||| |||  || |    ||  | | |     |  | | || |||     ||| ||||| |||||||||||| |||||||||||||| | ||| | ||||||||  ||||||||||||||||| | ||||| || ||||| |||||||| |||||||
-----gtaaagctagaatc----gtctaa--cttgcttagccttagaatatctgaggattggttctcatttttaccttcctctacagGATTTTGTTGCTAGTGAAAATAGGCCAAAGGCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC

upper sequence: GLYMA02G32100.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 7
gtaatgctattctagaatctagaatctaattcttacttctccatttgttagttaa-agtggattcattaattctacaaatatctccagGAGTTTGTTGCTAGTCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGACGCATTCATTTAAGTCCAACTTTGATTCTTGGC
            ||||| ||    | | || | |   ||    ||  |||  ||| |  | | ||     | | |      ||  ||||| |||||| |||| |||||||| |||||| | ||  |  |||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||
-----------gtagaagct----tatcatccatttatccatgttctttatataacaacgaactctcatctccaattttcttcctcagGAATTTGTTTCTAGCCAAAATAGACCAAAGGCAACTCGTGTAACCCGGGTTATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttctccatttgttagttaaagtggattcattaattctacaaatatctccagGAGTTTGTTGCTAGTCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGACGCATTCATTTAAGTCCAACTTTGATTCTTGGC
                                              tatctcc  CT-rich tract
                            attcattaattctaca  TA-rich tract