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...tattttgtatgaactaaagccgaatgaggtgtatattatgtgttatttttaagttcagttcaaaagggatgaataattttaattacataattattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGCCTATAGTTTCCGTGGGTCAATAAAGGATTGCTGCTACGGTCAGTAGCAT
species | Glycine max |
transcript | GLYMA02G28000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA GCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGCEST: gi|13477679|gb|BG507460.1|BG507460
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGC
EST: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA GCTCTGGATTTGACCAAEST: gi|51338535|gb|CO982401.1|CO982401
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAA
EST: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA GCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGCEST: gi|9902510|gb|BE611478.1|BE611478
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGC
EST: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTA GCTCTGGATTTGACCAA
genomic: ACTTTTAAATCCTCCAGAAATGCTCAATTCTATGATGGGAAGCACAATTAgtaagtactg ... ttattttcagGCTCTGGATTTGACCAA
tttttaagttcagttcaaaagggatgaataattttaattacataattattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGCCTATAGTTTCCGTGGGTCAATAAAGGATTGCTGCTACGGTCAGTAGCAT
ttttaat putative branch site (score: 3)
ttattttc putative PPT
aaaagggatgaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgtatgaactaaagccgaatgaggtgtatattatgtgttatttttaagttcagttcaaaagggatgaataattttaattacataattattttcagGCTCTGGATTTGACCAAGAAGGGAGTGACCTTCCAAACATGGTATTATTGCCTATAGTTTCCGTGGGTCAATAAAGGATTGCTGCTACGGTCAGTAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -tatgaac
- - - - - - - - - - -gaatgag